Occurrence record: BD29178_Mjap_Gib2022_COI_1

Material Sample of Mya japonica | Soft-shelled Clam recorded on 2021-09-24

Event details

This record is part of a structured events based dataset.

Survey
- Survey

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API

Dataset

Data resource	2024-25 - Data Mobilisation - SARDI PCR
Occurrence ID	BD29178_Mjap_Gib2022_COI_1
Record type	Material Sample Supplied basis "Material Sample"
License	CC-BY 4.0 (Int) Supplied as Creative Commons Attribution (International) (CC-BY 4.0 (Int) 4.0)
Field Number	BD29178
Presence/Absence	ABSENT Supplied as Absent
Material sample ID	ADL-A26

Event

Event ID	2021-22_Molecular_surveys_Outer_Harbor_Winter
Parent Event ID	2021-22_Molecular_surveys
Event hierarchy	"Survey" / "Survey"
Field Number	BD29178
Occurrence date	2021-09-24
Sampling protocol	Targeted qPCR Assay
End day of year	267
Date precision	DAY
Start day of year	267

Taxonomy

Scientific name	Mya japonica
Identified to rank	species
Common name	Soft-shelled Clam
Kingdom	Animalia
Phylum	Mollusca
Class	Bivalvia
Order	Myida
Family	Myidae
Genus	Mya
Species	Mya japonica
Name match metric	exactMatch
Name parse type	SCIENTIFIC

Geospatial

Country	Australia
State or Territory	South Australia
Latitude	-34.7658 Supplied as: "-34.7658"
Longitude	138.49301 Supplied as: "138.49301"
Datum	EPSG:4326
Coordinate precision	Unknown
Terrestrial	true
Biome	TERRESTRIAL
Marine	false
Country Code	AU

Additional properties

0000016	qPCR
0000026	ADL-A26
0001225	Targeted qPCR Assay
assay name	Mjap_Gib2022_COI
assay type	targeted
detection criteria	single technical replicate positive with normal amplification within 45 cycles
pcr 0 1	1
pcr plate id	SARDI_MDL_14411
technical rep id	1
amplification method	qPCR
core id	2021-22_Molecular_surveys_Outer_Harbor_Winter
material entity id	BD29178
parent id	2021-22_Molecular_surveys
samp collec method	Targeted qPCR Assay
samp mat process	qPCR
sample name	Mjap_Gib2022_COI-SARDI_MDL_14411
source mat id	ADL-A26
target taxonomic assay	Mya japonica

User flagged issues

Data quality tests

Test name	Result
Coordinate uncertainty meters invalid	Warning
Country inferred from coordinates	Warning
Geodetic datum assumed WGS84	Warning
Show/Hide 78 passed properties
Basis of record badly formed	Passed
CONTINENT_COORDINATE_MISMATCH	Passed
Continent country mismatch	Passed
Continent derived from coordinates	Passed
CONTINENT_DERIVED_FROM_COUNTRY	Passed
Continent invalid	Passed
Coordinates centre of country	Passed
Supplied coordinates centre of state	Passed
Coordinate invalid	Passed
Coordinates are out of range for species	Passed
Coordinates converted to WGS84	Passed
Decimal latitude/longitude conversion failed	Passed
Coordinate reprojection suspicious	Passed
Coordinate rounded	Passed
Coordinates dont match supplied country	Passed
Country invalid	Passed
Country mismatch	Passed
First of the century	Passed
First of the month	Passed
First of the year	Passed
Unrecognized geodetic datum	Passed
Georeferenced after occurrence date	Passed
Identification date before occurrence date	Passed
Interpretation error	Passed
Invalid scientific name	Passed
Location not supplied	Passed
Missing collection date	Passed
Multimedia date invalid	Passed
Multimedia uri invalid	Passed
Name not supplied	Passed
Occurrence status inferred from basis of record	Passed
Occurrence status inferred from individual count	Passed
Occurrence status unparsable	Passed
Latitude is negated	Passed
Longitude is negated	Passed
Presumed swapped coordinate	Passed
Recorded date invalid	Passed
Recorded date mismatch	Passed
Recorded date unlikely	Passed
SCIENTIFIC_NAME_AND_ID_INCONSISTENT	Passed
Sensitivity report invalid	Passed
Sensitivity report not loadable	Passed
Coordinates dont match supplied state	Passed
Taxon affinity species	Passed
TAXON_CONCEPT_ID_NOT_FOUND	Passed
Taxon confer species	Passed
Taxon default match	Passed
Taxon error	Passed
Taxon excluded	Passed
Taxon excluded associated	Passed
Taxon homonym	Passed
Taxon indeterminate species	Passed
Taxon match aggregate	Passed
Taxon match fuzzy	Passed
Taxon match higher rank	Passed
TAXON_MATCH_NAME_AND_ID_AMBIGUOUS	Passed
Taxon match none	Passed
TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED	Passed
Taxon misapplied	Passed
Taxon misapplied matched	Passed
Taxon parent child synonym	Passed
Taxon question species	Passed
Resource taxonomic scope mismatch	Passed
Taxon species plural	Passed
Coordinate precision and uncertainty transposed	Passed
Uncertainty not specified	Passed
Supplied country not recognised	Passed
Kingdom not recognised	Passed
Supplied coordinates are zero	Passed
Biosecurity issue	Passed
Suspected outlier	Passed
Geospatial issue	Passed
Habitat incorrect for species	Passed
Taxon misidentified	Passed
Taxonomic issue	Passed
Temporal issue	Passed
Other issue	Passed
Duplicate record	Passed
Show/Hide 7 missing properties
Missing geodetic datum	Missing
Missing georeferenced by	Missing
Missing georeference protocol	Missing
Missing georeference sources	Missing
Missing georeference verification status	Missing
Missing georeference date	Missing
Missing taxon rank	Missing
Show/Hide 36 tests that have not been run
Unrecognized collection code	Unchecked (lack of data)
Unrecognized institution code	Unchecked (lack of data)
Coordinate precision invalid	Unchecked (lack of data)
Footprint SRS invalid	Unchecked (lack of data)
Footprint WKT mismatch	Unchecked (lack of data)
Footprint WKT invalid	Unchecked (lack of data)
TAXON_MATCH_SCIENTIFIC_NAME_ID_IGNORED	Unchecked (lack of data)
TAXON_MATCH_TAXON_ID_IGNORED	Unchecked (lack of data)
SCIENTIFIC_NAME_ID_NOT_FOUND	Unchecked (lack of data)
TAXON_ID_NOT_FOUND	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
Depth unlikely	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
Elevation unlikely	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
Altitude value supplied in feet	Unchecked (lack of data)
Altitude value non-numeric	Unchecked (lack of data)
Modified date invalid	Unchecked (lack of data)
Modified date unlikely	Unchecked (lack of data)
Identified date unlikely	Unchecked (lack of data)
Identified date invalid	Unchecked (lack of data)
Type status invalid	Unchecked (lack of data)
References uri invalid	Unchecked (lack of data)
Individual count invalid	Unchecked (lack of data)
Individual count conflicts with occurrence status	Unchecked (lack of data)
Georeferenced date unlikely	Unchecked (lack of data)
Georeferenced date invalid	Unchecked (lack of data)
Ambiguous institution	Unchecked (lack of data)
Ambiguous collection	Unchecked (lack of data)
Institution not matched	Unchecked (lack of data)
Collection not matched	Unchecked (lack of data)
Institution match fuzzy	Unchecked (lack of data)
Collection match fuzzy	Unchecked (lack of data)
Institution and Collection mismatch	Unchecked (lack of data)
Different owner institution	Unchecked (lack of data)

Group	Field Name	Original Value	Processed Value


Classification	Scientific name	Mya japonica	Mya japonica
	Match type		exactMatch
	Phylum id		https://biodiversity.org.au/afd/taxa/4fb59020-e4a8-4973-adca-a4f662c4645c
	Family id		https://biodiversity.org.au/afd/taxa/60c27deb-5e94-4664-b721-926080e2975a
	Taxon concept ID		ALA_DR24112_122
	Order		Myida
	Taxon rank id		7000
	Species id		ALA_DR24112_122
	Genus		Mya
	Left		101173
	Taxon rank		species
	Genus id		ALA_DR22913_177_0
	Name type		SCIENTIFIC
	Vernacular name		Soft-shelled Clam
	Order id		https://biodiversity.org.au/afd/taxa/8927a37e-c55b-4f56-83ef-40b2eea5dcaf
	Right		101173
	Kingdom		Animalia
	Class id		https://biodiversity.org.au/afd/taxa/d6ab0629-da3d-4e6a-8400-301515cb3f16
	Phylum		Mollusca
	Class		Bivalvia
	Species		Mya japonica
	Family		Myidae
	Kingdom id		https://biodiversity.org.au/afd/taxa/4647863b-760d-4b59-aaa1-502c8cdf8d3c
Event	Event ID	2021-22_Molecular_surveys_Outer_Harbor_Winter
	Year		2021
	End day of year		267
	Month		9
	Date precision		DAY
	Start day of year		267
	Parent event ID	2021-22_Molecular_surveys
	Day		24
	Event date	2021-09-24	2021-09-24
Occurrence	Field number	BD29178
	Occurrence status	Absent	ABSENT
	Basis of record	Material Sample	MATERIAL_SAMPLE
	Material sample ID	ADL-A26
	Occurrence ID	BD29178_Mjap_Gib2022_COI_1
	Sampling protocol	[Targeted qPCR Assay]
Attribution	Data resource		2024-25 - Data Mobilisation - SARDI PCR
	License	Creative Commons Attribution (International) (CC-BY 4.0 (Int) 4.0)	CC-BY 4.0 (Int)
	Data Resource ID	dr22811	dr22811
Location	Country		Australia
	Decimal latitude	-34.7658	-34.7658
	Terrestrial	true	true
	Decimal longitude	138.49301	138.49301
	State province		South Australia
	Biome		TERRESTRIAL
	Marine	false	false
	Country code		AU
	Geodetic datum		EPSG:4326