Occurrence record: FungiITS1-12562-620917

Material Sample of Agyrium rufum (Pers.) Fr. recorded on 2014-11-04

API

Dataset

Data resource	Biome of Australia Soil Environments
Occurrence ID	FungiITS1-12562-620917
Record type	Material Sample Supplied basis "MaterialSample"
Associated Occurrence Status	Associated record
Associated occurrences	The occurrence is associated with a representative record. For more information see Inferred associated occurrence details
License	CC-BY 4.0 (Int)
Associated references	Bissett, A., Fitzgerald, A., Meintjes, T., Mele, P., Reith, F., & Dennis, P. et al. (2016). Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database. Gigascience, 5(1), https://doi.org/10.1186/s13742-016-0126-5.
Presence/Absence	PRESENT Supplied as present
Material sample ID	https://www.ncbi.nlm.nih.gov/biosample/SAMN04874217
Associated records	ASSOCIATED
Occurrence remarks	You are viewing a record derived from DNA analysis, if you want further info on this type of occurrence record please go to this page: https://www.ala.org.au/environmentaldna/.

Event

Event ID	102.100.100/12562
Parent Event ID	https://www.ncbi.nlm.nih.gov/bioproject/PRJNA317932
Occurrence date	2014-11-04
End day of year	308
Date precision	DAY
Start day of year	308

Taxonomy

Scientific name	Agyrium rufum
Identified to rank	species
Kingdom	Fungi
Phylum	Ascomycota
Class	Lecanoromycetes
Order	Agyriales Supplied as "Pertusariales"
Family	Agyriaceae Supplied as "Pertusariaceae"
Genus	Agyrium
Species	Agyrium rufum
Name match metric	exactMatch
Scientific name authorship	(Pers.) Fr.
Name parse type	SCIENTIFIC

Geospatial

Country	Australia
State or Territory	Australian Capital Territory
Latitude	-35.8811 Supplied as: "-35.8811"
Longitude	149.0083 Supplied as: "149.0083"
Datum	EPSG:4326
Verbatim locality	Namadgi NP
Location remarks	Soil
Coordinate precision	Unknown
Terrestrial	true
Biome	TERRESTRIAL
Marine	false
Country Code	AU
Depth	0 cm

Additional properties

environment material	Soil
parent id	https://www.ncbi.nlm.nih.gov/bioproject/PRJNA317932
sample material process	Frozen
target gene	ITS1FITS4_fungi_ITS1

User flagged issues

Data quality tests

Test name	Result
Coordinate uncertainty meters invalid	Warning
Geodetic datum assumed WGS84	Warning
Show/Hide 80 passed properties
Basis of record badly formed	Passed
CONTINENT_COORDINATE_MISMATCH	Passed
Continent country mismatch	Passed
Continent derived from coordinates	Passed
CONTINENT_DERIVED_FROM_COUNTRY	Passed
Continent invalid	Passed
Coordinates centre of country	Passed
Supplied coordinates centre of state	Passed
Coordinate invalid	Passed
Coordinates are out of range for species	Passed
Coordinates converted to WGS84	Passed
Decimal latitude/longitude conversion failed	Passed
Coordinate reprojection suspicious	Passed
Coordinate rounded	Passed
Coordinates dont match supplied country	Passed
Country inferred from coordinates	Passed
Country invalid	Passed
Country mismatch	Passed
First of the century	Passed
First of the month	Passed
First of the year	Passed
Unrecognized geodetic datum	Passed
Georeferenced after occurrence date	Passed
Identification date before occurrence date	Passed
Interpretation error	Passed
Invalid scientific name	Passed
Location not supplied	Passed
Missing collection date	Passed
Missing taxon rank	Passed
Multimedia date invalid	Passed
Multimedia uri invalid	Passed
Name not supplied	Passed
Occurrence status inferred from basis of record	Passed
Occurrence status inferred from individual count	Passed
Occurrence status unparsable	Passed
Latitude is negated	Passed
Longitude is negated	Passed
Presumed swapped coordinate	Passed
Recorded date invalid	Passed
Recorded date mismatch	Passed
Recorded date unlikely	Passed
SCIENTIFIC_NAME_AND_ID_INCONSISTENT	Passed
Sensitivity report invalid	Passed
Sensitivity report not loadable	Passed
Coordinates dont match supplied state	Passed
Taxon affinity species	Passed
TAXON_CONCEPT_ID_NOT_FOUND	Passed
Taxon confer species	Passed
Taxon default match	Passed
Taxon error	Passed
Taxon excluded	Passed
Taxon excluded associated	Passed
Taxon homonym	Passed
Taxon indeterminate species	Passed
Taxon match aggregate	Passed
Taxon match fuzzy	Passed
Taxon match higher rank	Passed
TAXON_MATCH_NAME_AND_ID_AMBIGUOUS	Passed
Taxon match none	Passed
TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED	Passed
Taxon misapplied	Passed
Taxon misapplied matched	Passed
Taxon parent child synonym	Passed
Taxon question species	Passed
Resource taxonomic scope mismatch	Passed
Taxon species plural	Passed
Coordinate precision and uncertainty transposed	Passed
Uncertainty not specified	Passed
Supplied country not recognised	Passed
Kingdom not recognised	Passed
Supplied coordinates are zero	Passed
Biosecurity issue	Passed
Suspected outlier	Passed
Geospatial issue	Passed
Habitat incorrect for species	Passed
Taxon misidentified	Passed
Taxonomic issue	Passed
Temporal issue	Passed
Other issue	Passed
Duplicate record	Passed
Show/Hide 6 missing properties
Missing geodetic datum	Missing
Missing georeferenced by	Missing
Missing georeference protocol	Missing
Missing georeference sources	Missing
Missing georeference verification status	Missing
Missing georeference date	Missing
Show/Hide 36 tests that have not been run
Unrecognized collection code	Unchecked (lack of data)
Unrecognized institution code	Unchecked (lack of data)
Coordinate precision invalid	Unchecked (lack of data)
Footprint SRS invalid	Unchecked (lack of data)
Footprint WKT mismatch	Unchecked (lack of data)
Footprint WKT invalid	Unchecked (lack of data)
TAXON_MATCH_SCIENTIFIC_NAME_ID_IGNORED	Unchecked (lack of data)
TAXON_MATCH_TAXON_ID_IGNORED	Unchecked (lack of data)
SCIENTIFIC_NAME_ID_NOT_FOUND	Unchecked (lack of data)
TAXON_ID_NOT_FOUND	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
Depth unlikely	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
Elevation unlikely	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
Altitude value supplied in feet	Unchecked (lack of data)
Altitude value non-numeric	Unchecked (lack of data)
Modified date invalid	Unchecked (lack of data)
Modified date unlikely	Unchecked (lack of data)
Identified date unlikely	Unchecked (lack of data)
Identified date invalid	Unchecked (lack of data)
Type status invalid	Unchecked (lack of data)
References uri invalid	Unchecked (lack of data)
Individual count invalid	Unchecked (lack of data)
Individual count conflicts with occurrence status	Unchecked (lack of data)
Georeferenced date unlikely	Unchecked (lack of data)
Georeferenced date invalid	Unchecked (lack of data)
Ambiguous institution	Unchecked (lack of data)
Ambiguous collection	Unchecked (lack of data)
Institution not matched	Unchecked (lack of data)
Collection not matched	Unchecked (lack of data)
Institution match fuzzy	Unchecked (lack of data)
Collection match fuzzy	Unchecked (lack of data)
Institution and Collection mismatch	Unchecked (lack of data)
Different owner institution	Unchecked (lack of data)

Inferred associated occurrence details

This record is associated with the representative record. This mean another record has been detected to be similar to this record, and that the other record (the representative record) has the most detailed information for the occurrence. More information about the duplication detection methods and terminology in use is available here:

https://github.com/AtlasOfLivingAustralia/ala-dataquality/wiki/INFERRED_DUPLICATE_RECORD

Representative Record
Record UUID	2575bf4a-4a2b-4b37-8977-abeb4380b4d9
Data Resource	Biome of Australia Soil Environments
Raw Scientific Name	Agyrium rufum
Coordinates	-35.881,149.0076
Related records
Record UUID	371f4b79-3cb8-4987-a7e8-bc3911293c25
Data Resource	Biome of Australia Soil Environments
Raw Scientific Name	Agyrium rufum
Coordinates	-35.881,149.0076
Record UUID	9f9f7281-cd1b-4f4c-a909-7e94de814f32
Data Resource	Biome of Australia Soil Environments
Raw Scientific Name	Agyrium rufum
Coordinates	-35.881,149.0076
Record UUID	f02c8a75-4c87-4a55-911b-3fa8f827d454
Data Resource	Biome of Australia Soil Environments
Raw Scientific Name	Agyrium rufum
Coordinates	-35.8811,149.0083
Record UUID	e0cd0e35-f4e4-447f-b853-d5da8b87599c
Data Resource	Biome of Australia Soil Environments
Raw Scientific Name	Agyrium rufum
Coordinates	-35.881,149.0076
Record UUID	950e1cbf-9a4d-46a2-a238-8877a5c3bdae
Data Resource	Biome of Australia Soil Environments
Raw Scientific Name	Agyrium rufum
Coordinates	-35.8811,149.0083

Group	Field Name	Original Value	Processed Value


Classification	Scientific name	Agyrium rufum	Agyrium rufum
	Match type		exactMatch
	Phylum id		NZOR-6-88401
	Family id		NZOR-6-36188
	Taxon concept ID		NZOR-6-11905
	Order	Pertusariales	Agyriales
	Taxon rank id		7000
	Species id		NZOR-6-11905
	Genus	Agyrium	Agyrium
	Left		710189
	Scientific name authorship		(Pers.) Fr.
	Taxon rank	species	species
	Genus id		NZOR-6-22963
	Name type		SCIENTIFIC
	Order id		NZOR-6-57270
	Right		710189
	Kingdom	Fungi	Fungi
	Class id		NZOR-6-61683
	Phylum	Ascomycota	Ascomycota
	Class	Lecanoromycetes	Lecanoromycetes
	Species	Agyrium rufum	Agyrium rufum
	Family	Pertusariaceae	Agyriaceae
	Kingdom id		https://id.biodiversity.org.au/taxon/fungi/60119249
Event	Event ID	102.100.100/12562
	Year		2014
	End day of year		308
	Month		11
	Date precision		DAY
	Start day of year		308
	Parent event ID	https://www.ncbi.nlm.nih.gov/bioproject/PRJNA317932
	Day		4
	Event date	2014-11-04	2014-11-04
Occurrence	Associated occurrences		2575bf4a-4a2b-4b37-8977-abeb4380b4d9
	Associated references	Bissett, A., Fitzgerald, A., Meintjes, T., Mele, P., Reith, F., & Dennis, P. et al. (2016). Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database. Gigascience, 5(1), https://doi.org/10.1186/s13742-016-0126-5.
	Duplication status		D
	Occurrence status	present	PRESENT
	Basis of record	MaterialSample	MATERIAL_SAMPLE
	Material sample ID	https://www.ncbi.nlm.nih.gov/biosample/SAMN04874217
	Occurrence ID	FungiITS1-12562-620917
	Duplicate status		ASSOCIATED
	Occurrence remarks	You are viewing a record derived from DNA analysis, if you want further info on this type of occurrence record please go to this page: https://www.ala.org.au/environmentaldna/.
Attribution	Data resource		Biome of Australia Soil Environments
	License		CC-BY 4.0 (Int)
	Data Resource ID	dr10487	dr10487
Location	Country	Australia	Australia
	Decimal latitude	-35.8811	-35.8811
	Terrestrial	true	true
	Decimal longitude	149.0083	149.0083
	State province		Australian Capital Territory
	Verbatim locality	Namadgi NP
	Biome		TERRESTRIAL
	Lga	Unincorporated ACT
	Marine	false	false
	Location remarks	Soil
	Country code		AU
	Geodetic datum		EPSG:4326
	Verbatim depth	0 cm