Occurrence record: urn:edna:IN2017_V01_KC06_170-854EB71697039EEF733BAA2242ECC092

Material Sample of Yarrowia lipolytica (Wick., Kurtzman & Herman) Arx & Van der Walt recorded on 2017-02-11

API

Dataset

Data partner	Ocean Biodiversity Information System
Data resource	eDNA samples from the surface ocean to the seafloor collected by RV Investigator voyage IN2017_V01 - Linking Modern and Paleo-Genetics at the Sabrina Coast East Antarctica (2017)
Institution code	Supplied institution code "utas"
Occurrence ID	urn:edna:IN2017_V01_KC06_170-854EB71697039EEF733BAA2242ECC092
Record type	Material Sample Supplied basis "MaterialSample"
Collector	Armbrecht et al. 2023 \| Amaranta Focardi
Associated Occurrence Status	Associated record
Associated occurrences	The occurrence is associated with a representative record. For more information see Inferred associated occurrence details
Associated occurrences	Armbrecht, L, Focardi, A (2023) Data from: Revision of Totten Glacier ocean & sediment DNA (IN2017_V01). https://dx.doi.org/10.25959/4pd2-b503
License	CC-BY
Presence/Absence	PRESENT Supplied as present
Organism quantity	1
Material sample ID	IN2017_V01_KC06_170
Organism quantity type	DNA sequence reads
Bibliographic citation	Armbrecht, L., Focardi, A., Lawler, K.-A., O’Brien, P., Leventer, A., Noble, T. L., et al. (2023). From the surface ocean to the seafloor: Linking modern and paleo-genetics at the Sabrina Coast, East Antarctica (IN2017_V01). Journal of Geophysical Research: Biogeosciences, 128, e2022JG007252. https://doi.org/10.1029/2022JG007252
Associated records	ASSOCIATED
Identification references	SilvaV132 (https://www.arb-silva.de/)
Identification remarks	Removal of sequences <25 bp (AdapterRemoval v. 2.1.7-foss-2016a; Schubert et al., 2016), and of low complexity (threshold 0.55; Komplexity software, E. L. Clarke et al., 2019) and duplicate reads (“dedupe” tool in BBMap v.37.36). Alignments at 95% minimum percent identity (MPI).

Event

Event ID	IN2017_V01_KC06_170
Identification remarks	Removal of sequences <25 bp (AdapterRemoval v. 2.1.7-foss-2016a; Schubert et al., 2016), and of low complexity (threshold 0.55; Komplexity software, E. L. Clarke et al., 2019) and duplicate reads (“dedupe” tool in BBMap v.37.36). Alignments at 95% minimum percent identity (MPI).
Occurrence date	2017-02-11
Sampling protocol	Sediment coring (Kasten Coring). See Armbrecht, Focardi et al. 2023 (https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2022JG007252) and Armand et al. 2023 (https://openresearch-repository.anu.edu.au/handle/1885/142525)
End day of year	42
Date precision	DAY
Start day of year	42

Taxonomy

Scientific name	Yarrowia lipolytica
Identified to rank	species
Kingdom	Fungi Supplied as "Eukaryota"
Phylum	Ascomycota
Class	Saccharomycetes
Order	Saccharomycetales
Family	Dipodascaceae
Genus	Yarrowia
Species	Yarrowia lipolytica
Name match metric	exactMatch
Scientific name authorship	(Wick., Kurtzman & Herman) Arx & Van der Walt
Name parse type	SCIENTIFIC

Geospatial

Country	Antarctica
Locality	Sabrina Coast of Antarctica
Latitude	-64.729 Supplied as: "-64.729"
Longitude	118.696 Supplied as: "118.696"
Datum	EPSG:4326
Minimum depth in metres	3361
Maximum depth in metres	3361
Coordinate precision	Unknown
Coordinate uncertainty (in metres)	100.0
Terrestrial	false
Maximum distance above surface in meters	-1.7
Biome	MARINE
Minimum distance above surface in meters	-1.71 Supplied as -1.715
Marine	true
Country Code	AQ
Footprint well known text	POINT(-64.729 118.696)

User flagged issues

Data quality tests

Test name	Result
Country inferred from coordinates	Warning
Geodetic datum assumed WGS84	Warning
Kingdom not recognised	Warning
Show/Hide 94 passed properties
Ambiguous institution	Passed
Basis of record badly formed	Passed
CONTINENT_COORDINATE_MISMATCH	Passed
Continent country mismatch	Passed
Continent derived from coordinates	Passed
CONTINENT_DERIVED_FROM_COUNTRY	Passed
Continent invalid	Passed
Coordinates centre of country	Passed
Supplied coordinates centre of state	Passed
Coordinate invalid	Passed
Coordinates are out of range for species	Passed
Coordinates converted to WGS84	Passed
Decimal latitude/longitude conversion failed	Passed
Coordinate reprojection suspicious	Passed
Coordinate rounded	Passed
Coordinate uncertainty meters invalid	Passed
Coordinates dont match supplied country	Passed
Country invalid	Passed
Country mismatch	Passed
Min and max depth reversed	Passed
Depth value non-numeric	Passed
Depth value supplied in feet	Passed
Depth unlikely	Passed
Different owner institution	Passed
First of the century	Passed
First of the month	Passed
First of the year	Passed
Footprint WKT invalid	Passed
Footprint WKT mismatch	Passed
Unrecognized geodetic datum	Passed
Georeferenced after occurrence date	Passed
Identification date before occurrence date	Passed
Institution and Collection mismatch	Passed
Institution match fuzzy	Passed
Institution not matched	Passed
Interpretation error	Passed
Invalid scientific name	Passed
Location not supplied	Passed
Missing collection date	Passed
Missing taxon rank	Passed
Modified date invalid	Passed
Modified date unlikely	Passed
Multimedia date invalid	Passed
Multimedia uri invalid	Passed
Name not supplied	Passed
Occurrence status inferred from basis of record	Passed
Occurrence status inferred from individual count	Passed
Occurrence status unparsable	Passed
Latitude is negated	Passed
Longitude is negated	Passed
Presumed swapped coordinate	Passed
Recorded date invalid	Passed
Recorded date mismatch	Passed
Recorded date unlikely	Passed
SCIENTIFIC_NAME_AND_ID_INCONSISTENT	Passed
Sensitivity report invalid	Passed
Sensitivity report not loadable	Passed
Coordinates dont match supplied state	Passed
Taxon affinity species	Passed
TAXON_CONCEPT_ID_NOT_FOUND	Passed
Taxon confer species	Passed
Taxon default match	Passed
Taxon error	Passed
Taxon excluded	Passed
Taxon excluded associated	Passed
Taxon homonym	Passed
Taxon indeterminate species	Passed
Taxon match aggregate	Passed
Taxon match fuzzy	Passed
Taxon match higher rank	Passed
TAXON_MATCH_NAME_AND_ID_AMBIGUOUS	Passed
Taxon match none	Passed
TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED	Passed
Taxon misapplied	Passed
Taxon misapplied matched	Passed
Taxon parent child synonym	Passed
Taxon question species	Passed
Resource taxonomic scope mismatch	Passed
Taxon species plural	Passed
Coordinate precision and uncertainty transposed	Passed
Uncertainty not specified	Passed
Supplied country not recognised	Passed
Unrecognized collection code	Passed
Unrecognized institution code	Passed
Supplied coordinates are zero	Passed
Biosecurity issue	Passed
Suspected outlier	Passed
Geospatial issue	Passed
Habitat incorrect for species	Passed
Taxon misidentified	Passed
Taxonomic issue	Passed
Temporal issue	Passed
Other issue	Passed
Duplicate record	Passed
Show/Hide 6 missing properties
Missing geodetic datum	Missing
Missing georeferenced by	Missing
Missing georeference protocol	Missing
Missing georeference sources	Missing
Missing georeference verification status	Missing
Missing georeference date	Missing
Show/Hide 21 tests that have not been run
Coordinate precision invalid	Unchecked (lack of data)
Footprint SRS invalid	Unchecked (lack of data)
TAXON_MATCH_SCIENTIFIC_NAME_ID_IGNORED	Unchecked (lack of data)
TAXON_MATCH_TAXON_ID_IGNORED	Unchecked (lack of data)
SCIENTIFIC_NAME_ID_NOT_FOUND	Unchecked (lack of data)
TAXON_ID_NOT_FOUND	Unchecked (lack of data)
Elevation unlikely	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
Altitude value supplied in feet	Unchecked (lack of data)
Altitude value non-numeric	Unchecked (lack of data)
Identified date unlikely	Unchecked (lack of data)
Identified date invalid	Unchecked (lack of data)
Type status invalid	Unchecked (lack of data)
References uri invalid	Unchecked (lack of data)
Individual count invalid	Unchecked (lack of data)
Individual count conflicts with occurrence status	Unchecked (lack of data)
Georeferenced date unlikely	Unchecked (lack of data)
Georeferenced date invalid	Unchecked (lack of data)
Ambiguous collection	Unchecked (lack of data)
Collection not matched	Unchecked (lack of data)
Collection match fuzzy	Unchecked (lack of data)

Inferred associated occurrence details

This record is associated with the representative record. This mean another record has been detected to be similar to this record, and that the other record (the representative record) has the most detailed information for the occurrence. More information about the duplication detection methods and terminology in use is available here:

https://github.com/AtlasOfLivingAustralia/ala-dataquality/wiki/INFERRED_DUPLICATE_RECORD

Representative Record
Record UUID	1c488208-ac9f-4c16-8284-032da78b8241
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696
Related records
Record UUID	ed71ac63-2299-40fd-8ec6-fe3fa14857eb
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696
Record UUID	da614228-7b44-4e6f-9382-f0ab8ef13537
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696
Record UUID	9b02ecd2-5bdb-4bbd-ae81-57f33d7e9ce4
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696
Record UUID	fa73af07-ebc6-43e7-8fcf-dbff2461a046
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696
Record UUID	58c932b1-e80e-4581-8111-02fa57bd903e
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696
Record UUID	d99219c7-9f35-44bb-9855-4e029c19784f
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696
Record UUID	81d0176b-ab23-45e8-bda3-32824b98eb0d
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696
Record UUID	9163daad-3fad-40dd-987a-dde74b342be6
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696
Record UUID	f72f707f-0853-4ecb-b4c7-5ecdf98a858a
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696
Record UUID	fd5502ef-f57e-41b8-9bf8-26f5019769fb
Data Resource
Raw Scientific Name	Yarrowia lipolytica
Coordinates	-64.729,118.696

Additional political boundaries information

Marine
Exclusive Economic Zone	Exclusive Economic Zone

Group	Field Name	Original Value	Processed Value


Classification	Scientific name	Yarrowia lipolytica	Yarrowia lipolytica
	Match type		exactMatch
	Phylum id		NZOR-6-88401
	Taxon concept ID		https://id.biodiversity.org.au/node/fungi/60114657
	Order	Saccharomycetales	Saccharomycetales
	Taxon rank id		7000
	Species id		https://id.biodiversity.org.au/node/fungi/60114657
	Genus	Yarrowia	Yarrowia
	Left		720572
	Scientific name authorship		(Wick., Kurtzman & Herman) Arx & Van der Walt
	Taxon rank	species	species
	Genus id		https://id.biodiversity.org.au/node/fungi/60114655
	Name type		SCIENTIFIC
	Order id		NZOR-6-97413
	Right		720572
	Kingdom	Eukaryota	Fungi
	Specific epithet	Yarrowia lipolytica
	Class id		NZOR-6-137216
	Phylum	Ascomycota	Ascomycota
	Class	Saccharomycetes	Saccharomycetes
	Species		Yarrowia lipolytica
	Family	Dipodascaceae
	Kingdom id		https://id.biodiversity.org.au/taxon/fungi/60119249
Event	Event ID	IN2017_V01_KC06_170
	Year		2017
	End day of year		42
	Month		2
	Date precision		DAY
	Start day of year		42
	Day		11
	Event date	2017-02-11	2017-02-11
Identification	Identification references	SilvaV132 (https://www.arb-silva.de/)
Identification	Identification remarks	Removal of sequences <25 bp (AdapterRemoval v. 2.1.7-foss-2016a; Schubert et al., 2016), and of low complexity (threshold 0.55; Komplexity software, E. L. Clarke et al., 2019) and duplicate reads (“dedupe” tool in BBMap v.37.36). Alignments at 95% minimum percent identity (MPI).
Occurrence	Associated occurrences	Armbrecht, L, Focardi, A (2023) Data from: Revision of Totten Glacier ocean & sediment DNA (IN2017_V01). https://dx.doi.org/10.25959/4pd2-b503	1c488208-ac9f-4c16-8284-032da78b8241
	Duplication status		D
	Occurrence status	present	PRESENT
	Basis of record	MaterialSample	MATERIAL_SAMPLE
	Modified	2023-08-17T00:10:36Z	2023-08-17T00:10:36Z
	Organism quantity	1
	Material sample ID	IN2017_V01_KC06_170
	Occurrence ID	urn:edna:IN2017_V01_KC06_170-854EB71697039EEF733BAA2242ECC092
	Organism quantity type	DNA sequence reads	DNA sequence reads
	Sampling protocol	[Sediment coring (Kasten Coring). See Armbrecht, Focardi et al. 2023 (https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2022JG007252) and Armand et al. 2023 (https://openresearch-repository.anu.edu.au/handle/1885/142525)]
	Bibliographic citation	Armbrecht, L., Focardi, A., Lawler, K.-A., O’Brien, P., Leventer, A., Noble, T. L., et al. (2023). From the surface ocean to the seafloor: Linking modern and paleo-genetics at the Sabrina Coast, East Antarctica (IN2017_V01). Journal of Geophysical Research: Biogeosciences, 128, e2022JG007252. https://doi.org/10.1029/2022JG007252
	Duplicate status		ASSOCIATED
	Institution code	utas
	Recorded by	Armbrecht et al. 2023 \| Amaranta Focardi
Attribution	Data resource		eDNA samples from the surface ocean to the seafloor collected by RV Investigator voyage IN2017_V01 - Linking Modern and Paleo-Genetics at the Sabrina Coast East Antarctica (2017)
	License		CC-BY
	Data provider uid		dp5183
	Data Resource ID	dr21962	dr21962
	Data partner		Ocean Biodiversity Information System
Location	Country		Antarctica
	Decimal latitude	-64.729	-64.729
	Terrestrial	false	false
	Maximum depth in meters	3361	3361.0
	Maximum distance above surface in meters	-1.7	-1.7
	Locality	Sabrina Coast of Antarctica	Sabrina Coast of Antarctica
	Decimal longitude	118.696	118.696
	Biome		MARINE
	Minimum distance above surface in meters	-1.715	-1.71
	Coordinate uncertainty in meters	100	100.0
	Marine	true	true
	Minimum depth in meters	3361	3361.0
	Country code		AQ
	Footprint well known text	POINT(-64.729 118.696)
	Geodetic datum		EPSG:4326